Yi, S. Y., Lee, D. J., Yeom, S. I., Yoon, J., Kim, Y. H., Kwon, S. Y., & Choi, D. (2010). A novel pepper (Capsicum annuum) receptor‐like kinase functions as a negative regulator of plant cell death via accumulation of superoxide anions. New phytologist, 185(3), 701-715.

Lee, S., Chung, E. J., Joung, Y. H., & Choi, D. (2010). Non-climacteric fruit ripening in pepper: increased transcription of EIL-like genes normally regulated by ethylene. Functional & integrative genomics, 10(1), 135-146.

Koo, D. H., Nam, Y. W., Choi, D., Bang, J. W., De Jong, H., & Hur, Y. (2010). Molecular cytogenetic mapping of Cucumis sativus and C. melo using highly repetitive DNA sequences. Chromosome research, 18(3), 325-336.

Kim, H. J., Han, J. H., Kwon, J. K., Park, M., Kim, B. D., & Choi, D. (2010). Fine mapping of pepper trichome locus 1 controlling trichome formation in Capsicum annuum L. CM334. Theoretical and applied genetics, 120(6), 1099-1106.

Kang, W. H., Hoang, N. H., Yang, H. B., Kwon, J. K., Jo, S. H., Seo, J. K., ... & Kang, B. C. (2010). Molecular mapping and characterization of a single dominant gene controlling CMV resistance in peppers (Capsicum annuum L.). Theoretical and applied genetics, 120(8), 1587-1596.

Oh, S. K., Baek, K. H., Seoung, E., Joung, Y., Choi, G. J., Park, J. M., ... & Choi, D. (2010). CaMsrB2, pepper methionine sulfoxide reductase B2, is a novel defense regulator against oxidative stress and pathogen attack. Plant physiology, pp-110.

Oh, S. K., Kamoun, S., & Choi, D. (2010). Oomycetes RXLR effectors function as both activator and suppressor of plant immunity. The Plant Pathology Journal, 26(3), 209-215.

Kang, S. R., Oh, S. K., Kim, J. J., Choi, D. I., & Baek, K. H. (2010). NMMP1, a matrix metalloprotease in Nicotiana benthamiana has a role in protection against bacterial infection. The Plant Pathology Journal, 26(4), 402-408.

Oh, S. K., Kim, S. B., Yeom, S. I., Lee, H. A., & Choi, D. (2010). Positive-selection and ligation-independent cloning vectors for large scale in planta expression for plant functional genomics. Molecules and cells, 30(6), 557-562.

Park, M., Jo, S., Kwon, J. K., Park, J., Ahn, J. H., Kim, S., ... & Kim, B. D. (2011). Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements. BMC genomics, 12(1), 85.

Kim, H. J., Baek, K. H., Lee, B. W., Choi, D., & Hur, C. G. (2011). In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants. Genome, 54(2), 91-98.

An, S. J., Pandeya, D., Park, S. W., Li, J., Kwon, J. K., Koeda, S., ... & Kang, B. C. (2011). Characterization and genetic analysis of a low-temperature-sensitive mutant, sy-2, in Capsicum chinense. Theoretical and applied genetics, 122(3), 459-470.

Kim, H. J., Han, J. H., Kim, S., Lee, H. R., Shin, J. S., Kim, J. H., ... & Choi, D. (2011). Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.). Theoretical and applied genetics, 122(6), 1051-1058.

Jo, S. H., Park, H. M., Kim, S. M., Kim, H. H., Hur, C. G., & Choi, D. (2011). Unraveling the sequence dynamics of the formation of genus-specific satellite DNAs in the family solanaceae. Heredity, 106(5), 876.

Yeom, S. I., Baek, H. K., Oh, S. K., Kang, W. H., Lee, S. J., Lee, J. M., ... & Choi, D. (2011). Use of a secretion trap screen in pepper following Phytophthora capsici infection reveals novel functions of secreted plant proteins in modulating cell death. Molecular plant-microbe interactions, 24(6), 671-684.

Shi, J., Yeom, S. I., Kang, W. H., Park, M. K., Choi, D., Kwon, J. K., ... & Kang, B. C. (2011). Isolation of an Rx homolog from C. annuum and the evolution of Rx genes in the Solanaceae family. Plant biotechnology reports, 5(4), 331-344.  

Cho, J., Park, M., Choi, D., & Lee, S. K. (2012). Cloning and expression of γ‐glutamyl transpeptidase and its relationship to greening in crushed garlic (Allium sativum) cloves. Journal of the Science of Food and Agriculture, 92(2), 253-257.

Koeda, S., Hosokawa, M., Kang, B. C., Tanaka, C., Choi, D., Sano, S., ... & Yazawa, S. (2012). Defense response of a pepper cultivar cv. Sy-2 is induced at temperatures below 24 C. Journal of plant research, 125(1), 137-145.

Kim, H. J., Seo, E. Y., Kim, J. H., Cheong, H. J., Kang, B. C., & Choi, D. I. (2012). Morphological classification of trichomes associated with possible biotic stress resistance in the genus Capsicum. The Plant Pathology Journal, 28(1), 107-113.

Yeom, S. I., Seo, E., Oh, S. K., Kim, K. W., & Choi, D. (2012). A common plant cell‐wall protein HyPRP1 has dual roles as a positive regulator of cell death and a negative regulator of basal defense against pathogens. The Plant Journal, 69(5), 755-768.

Park, M., Park, J., Kim, S., Kwon, J. K., Park, H. M., Bae, I. H., ... & Choi, D. (2012). Evolution of the large genome in Capsicum annuum occurred through accumulation of single‐type long terminal repeat retrotransposons and their derivatives. The Plant Journal, 69(6), 1018-1029.

Seo, E., Yeom, S. I., Jo, S., Jeong, H., Kang, B. C., & Choi, D. (2012). Ectopic expression of Capsicum-specific cell wall protein Capsicum annuum senescence-delaying 1 (CaSD1) delays senescence and induces trichome formation in Nicotiana benthamiana. Molecules and cells, 33(4), 415-422.

Tomato Genome Consortium. (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485(7400), 635.

Lee, Y., Kim, Y. C., Kim, S. Y., Lee, I. J., Choi, D., Paek, K. H., ... & Park, J. M. (2012). A novel gibberellin 2-oxidase gene CaGA2ox1 in pepper is specifically induced by incompatible plant pathogens. Plant biotechnology reports, 6(4), 381-390.

Strauß, T., van Poecke, R. M., Strauß, A., Römer, P., Minsavage, G. V., Singh, S., ... & Yeom, S. I. (2012). RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome. Proceedings of the National Academy of Sciences, 109(47), 19480-19485.

Lee, J. H., Yu, D. J., Kim, S. J., Choi, D., & Lee, H. J. (2012). Intraspecies differences in cold hardiness, carbohydrate content and β-amylase gene expression of Vaccinium corymbosum during cold acclimation and deacclimation. Tree physiology, 32(12), 1533-1540.  

Bae, C., Kim, S. M., Lee, D. J., & Choi, D. (2013). Multiple classes of immune-related proteases associated with the cell death response in pepper plants. PloS one, 8(5), e63533.

Hwang, D. G., Park, J. H., Lim, J. Y., Kim, D., Choi, Y., Kim, S., ... & Kim, S. (2013). The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper. PLoS One, 8(5), e64238.

Kim, S. M., Bae, C., Oh, S. K., & Choi, D. (2013). A pepper (Capsicum annuum L.) metacaspase 9 (Camc9) plays a role in pathogen‐induced cell death in plants. Molecular plant pathology, 14(6), 557-566.

Lee, J., Park, S., Han, J., Choi, D., & Yoon, J. (2013). Development of a genetic map of chili pepper using single nucleotide polymorphism markers generated from next generation resequencing of parents. Korean Journal of Horticultural Science & Technology, 31(4), 473-482.

Lee, S., & Choi, D. (2013). Comparative transcriptome analysis of pepper (Capsicum annuum) revealed common regulons in multiple stress conditions and hormone treatments. Plant cell reports, 32(9), 1351-1359.

Lee, J. H., Kim, Y. C., Choi, D., & Park, J. M. (2013). Identification of novel pepper genes involved in Bax-or INF1-mediated cell death responses by high-throughput virus-induced gene silencing. International journal of molecular sciences, 14(11), 22782-22795.

Oh, S. K., Yoon, J., Choi, G. J., Jang, H. A., Kwon, S. Y., & Choi, D. (2013). Capsicum annuum homeobox 1 (CaHB1) is a nuclear factor that has roles in plant development, salt tolerance, and pathogen defense. Biochemical and biophysical research communications, 442(1), 116-121.  

Reddy, U. K., Almeida, A., Abburi, V. L., Alaparthi, S. B., Unselt, D., Hankins, G., ... & Nimmakayala, P. (2014). Identification of gene-specific polymorphisms and association with capsaicin pathway metabolites in Capsicum annuum L. collections. PLoS One, 9(1), e86393.

Choi, H. I., Waminal, N. E., Park, H. M., Kim, N. H., Choi, B. S., Park, M., ... & Kim, H. H. (2014). Major repeat components covering one‐third of the ginseng (P anax ginseng CA Meyer) genome and evidence for allotetraploidy. The Plant Journal, 77(6), 906-916.

Kim, S., Park, M., Yeom, S. I., Kim, Y. M., Lee, J. M., Lee, H. A., ... & Jung, K. (2014). Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Nature genetics, 46(3), 270.

Kim, J. S., Park, H. M., Chae, S., Lee, T. H., Hwang, D. J., Oh, S. D., ... & Kim, Y. H. (2014). A pepper MSRB2 gene confers drought tolerance in rice through the protection of chloroplast-targeted genes. PloS one, 9(3), e90588.

Jung, C. J., Hur, Y. Y., Jung, S. M., Noh, J. H., Do, G. R., Park, S. J., ... & Lee, H. J. (2014). Transcriptional changes of gibberellin oxidase genes in grapevines with or without gibberellin application during inflorescence development. Journal of plant research, 127(2), 359-371.

Oh, S. K., Kim, H., & Choi, D. (2014). Rpi-blb2-mediated late blight resistance in Nicotiana benthamiana requires SGT1 and salicylic acid-mediated signaling but not RAR1 or HSP90. FEBS letters, 588(7), 1109-1115.

Kim, Y. M., Choi, J., Lee, H. Y., Lee, G. W., Lee, Y. H., & Choi, D. (2014). dbCRY: a Web-based comparative and evolutionary genomics platform for blue-light receptors. Database, 2014.

Oh, S. K., Jang, H. A., Lee, S. S., Cho, H. S., Lee, D. H., Choi, D., & Kwon, S. Y. (2014). Cucumber Pti1-L is a cytoplasmic protein kinase involved in defense responses and salt tolerance. Journal of plant physiology, 171(10), 817-822.

Tran, P. T., Choi, H., Kim, S. B., Lee, H. A., Choi, D., & Kim, K. H. (2014). A simple method for screening of plant NBS-LRR genes that confer a hypersensitive response to plant viruses and its application for screening candidate pepper genes against Pepper mottle virus. Journal of virological methods, 201, 57-64.

Oh, S. K., Jang, H. A., Kim, J., Choi, D., Park, Y. I., & Kwon, S. Y. (2014). Expression of cucumber LOX genes in response to powdery mildew and defense-related signal molecules. Canadian journal of plant science, 94(5), 845-850.

Nimmakayala, P., Abburi, V. L., Abburi, L., Alaparthi, S. B., Cantrell, R., Park, M., ... & Reddy, U. K. (2014). Linkage disequilibrium and population-structure analysis among Capsicum annuum L. cultivars for use in association mapping. Molecular genetics and genomics, 289(4), 513-521.

Lee, H. A., Kim, S. Y., Oh, S. K., Yeom, S. I., Kim, S. B., Kim, M. S., ... & Choi, D. (2014). Multiple recognition of RXLR effectors is associated with nonhost resistance of pepper against Phytophthora infestans. New Phytologist, 203(3), 926-938.

Oh, S. K., Kwon, S. Y., & Choi, D. (2014). Rpi-blb2-mediated hypersensitive cell death caused by Phytophthora infestans AVRblb2 requires SGT1, but not EDS1, NDR1, salicylic acid-, jasmonic acid-, or ethylene-mediated signaling. The plant pathology journal, 30(3), 254.

Liu, W. Y., Kang, J. H., Jeong, H. S., Choi, H. J., Yang, H. B., Kim, K. T., ... & Kang, B. C. (2014). Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper. Theoretical and applied genetics, 127(11), 2503-2513.

Jeong, H. J., Kang, J. H., Zhao, M., Kwon, J. K., Choi, H. S., Bae, J. H., ... & Kang, B. C. (2014). Tomato Male sterile 10 35 is essential for pollen development and meiosis in anthers. Journal of experimental botany, 65(22), 6693-6709.  

Kim, S., Kim, M. S., Kim, Y. M., Yeom, S. I., Cheong, K., Kim, K. T., ... & Lee, Y. H. (2014). Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.). DNA Research, 22(1), 19-27.

Ali, M. S., Kim, K. W., Dhakal, R., Choi, D., & Baek, K. H. (2015). Accumulation of high contents of free amino acids in the leaves of Nicotiana benthamiana by the co-suppression of NbClpC1 and NbClpC2 genes. Plant cell reports, 34(3), 355-365.

Kim, S. B., Lee, H. Y., Seo, S., Lee, J. H., & Choi, D. (2015). RNA-dependent RNA polymerase (NIb) of the potyviruses is an avirulence factor for the broad-spectrum resistance gene Pvr4 in Capsicum annuum cv. CM334. PloS one, 10(3), e0119639.

Ahn, J. H., Kim, J. S., Kim, S., Soh, H. Y., Shin, H., Jang, H., ... & Kim, K. S. (2015). De novo transcriptome analysis to identify anthocyanin biosynthesis genes responsible for tissue-specific pigmentation in zoysiagrass (Zoysia japonica Steud.). PLoS One, 10(4), e0124497.

Seo, E., & Choi, D. (2015). Functional studies of transcription factors involved in plant defenses in the genomics era. Briefings in functional genomics, 14(4), 260-267.

Tran, P. T., Choi, H., Choi, D., & Kim, K. H. (2015). Molecular characterization of Pvr9 that confers a hypersensitive response to Pepper mottle virus (a potyvirus) in Nicotiana benthamiana. Virology, 481, 113-123.

Kim, H. J., Jung, J., Kim, M. S., Lee, J. M., Choi, D., & Yeam, I. (2015). Molecular marker development and genetic diversity exploration by RNA-seq in Platycodon grandiflorum. Genome, 58(10), 441-451.

Jang, Y. K., Jung, E. S., Lee, H. A., Choi, D., & Lee, C. H. (2015). Metabolomic characterization of hot pepper (Capsicum annuum “CM334”) during fruit development. Journal of agricultural and food chemistry, 63(43), 9452-9460.

Kim, S., Kim, C. W., Park, M., & Choi, D. (2015). Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq. Theoretical and applied genetics, 128(11), 2289-2299.

Kim, K. H., Hwang, J. H., Han, D. Y., Park, M., Kim, S., Choi, D., ... & Park, Y. H. (2015). Major quantitative trait loci and putative candidate genes for powdery mildew resistance and fruit-related traits revealed by an intraspecific genetic map for watermelon (Citrullus lanatus var. lanatus). PloS one, 10(12), e0145665.  

Han, K., Jeong, H. J., Yang, H. B., Kang, S. M., Kwon, J. K., Kim, S., ... & Kang, B. C. (2016). An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum). DNA Research, 23(2), 81-91.

Lee, J., Park, S. J., Hong, S. C., Han, J. H., Choi, D., & Yoon, J. B. (2016). QTL mapping for capsaicin and dihydrocapsaicin content in a population of Capsicum annuum ‘NB 1’× Capsicum chinense ‘Bhut Jolokia’. Plant Breeding, 135(3), 376-383.

Tran, P. T., Choi, H., Choi, D., & Kim, K. H. (2016). Virus-induced gene silencing reveals signal transduction components required for the Pvr9-mediated hypersensitive response in Nicotiana benthamiana. Virology, 495, 167-172.

Seo, E., Kim, S., Yeom, S. I., & Choi, D. (2016). Genome-wide comparative analyses reveal the dynamic evolution of nucleotide-binding leucine-rich repeat gene family among Solanaceae plants. Frontiers in plant science, 7, 1205.

Kang, W. H., Kim, S., Lee, H. A., Choi, D., & Yeom, S. I. (2016). Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper. Scientific reports, 6, 33332.

Jo, Y. D., Ha, Y., Lee, J. H., Park, M., Bergsma, A. C., Choi, H. I., ... & Kang, B. C. (2016). Fine mapping of Restorer-of-fertility in pepper (Capsicum annuum L.) identified a candidate gene encoding a pentatricopeptide repeat (PPR)-containing protein. Theoretical and applied genetics, 129(10), 2003-2017.

Seo, E., Woo, J., Park, E., Bertolani, S. J., Siegel, J. B., Choi, D., & Dinesh-Kumar, S. P. (2016). Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4. Autophagy, 12(11), 2054-2068.

Nimmakayala, P., Abburi, V. L., Saminathan, T., Almeida, A., Davenport, B., Davidson, J., ... & Stommel, J. (2016). Genome-wide divergence and linkage disequilibrium analyses for Capsicum baccatum revealed by genome-anchored single nucleotide polymorphisms. Frontiers in plant science, 7, 1646.

Nimmakayala, P., Abburi, V. L., Saminathan, T., Alaparthi, S. B., Almeida, A., Davenport, B., ... & Malkaram, S. (2016). Genome-wide diversity and association mapping for capsaicinoids and fruit weight in capsicum annuum L. Scientific reports, 6, 38081.  

Kim, S. B., Kang, W. H., Huy, H. N., Yeom, S. I., An, J. T., Kim, S., ... & Choi, D. (2017). Divergent evolution of multiple virus‐resistance genes from a progenitor in Capsicum spp. New Phytologist, 213(2), 886-899.

Kim, J., Park, M., Jeong, E. S., Lee, J. M., & Choi, D. (2017). Harnessing anthocyanin-rich fruit: a visible reporter for tracing virus-induced gene silencing in pepper fruit. Plant methods, 13(1), 3.

Lee, H. A., Lee, H. Y., Seo, E., Lee, J., Kim, S. B., Oh, S., ... & Choi, D. (2017). Current understandings of plant nonhost resistance. Molecular plant-microbe interactions, 30(1), 5-15.

Lee, D. J., Choi, H. J., Moon, M. E., Chi, Y. T., Ji, K. Y., & Choi, D. (2017). Superoxide serves as a putative signal molecule for plant cell division: overexpression of CaRLK1 promotes the plant cell cycle via accumulation of O2− and decrease in H2O2. Physiologia plantarum, 159(2), 228-243.

Kim, Y. M., Kim, S., Koo, N., Shin, A. Y., Yeom, S. I., Seo, E., ... & Jang, I. (2016). Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants. Dna Research, 24(1), 71-80.

Park, E., Lee, H. Y., Woo, J., Choi, D., & Dinesh-Kumar, S. P. (2017). Spatiotemporal monitoring of Pseudomonas effectors via type III secretion using split fluorescent protein fragments. The Plant Cell, tpc-00047.

Lee, H. A., Kim, S., Kim, S., & Choi, D. (2017). Expansion of sesquiterpene biosynthetic gene clusters in pepper confers nonhost resistance to the Irish potato famine pathogen. New Phytologist, 215(3), 1132-1143.

Ha, J. H., Jang, H. A., Moon, K. B., Baek, K. H., Choi, G. J., Choi, D., ... & Kim, H. S. (2017). Nicotiana benthamiana Matrix Metalloprotease 1 (NMMP1) gene confers disease resistance to Phytophthora infestans in tobacco and potato plants. Journal of plant physiology, 218, 189-195.

Kim, S., Park, J., Yeom, S. I., Kim, Y. M., Seo, E., Kim, K. T., ... & Kim, S. B. (2017). New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication. Genome biology, 18(1), 210.

Jo, J., Venkatesh, J., Han, K., Lee, H. Y., Choi, G. J., Lee, H. J., ... & Kang, B. C. (2017). Molecular Mapping of PMR1, a Novel Locus Conferring Resistance to Powdery Mildew in Pepper (Capsicum annuum). Frontiers in plant science, 8, 2090.  

Jeong, K., Choi, D., & Lee, J. (2018). Fine mapping of the genic male-sterile ms 1 gene in Capsicum annuum L. Theoretical and Applied Genetics, 131(1), 183-191.

Lee, J. H., Lee, S. E., Oh, S., Seo, E., & Choi, D. (2018). HSP70s Enhance a Phytophthora infestans Effector-Induced Cell Death via an MAPK Cascade in Nicotiana benthamiana. Molecular Plant-Microbe Interactions, 31(3), 356-362.

Qi, M., Grayczyk, J. P., Seitz, J. M., Lee, Y., Link, T. I., Choi, D., ... & Whitham, S. A. (2017). Suppression or activation of immune responses by predicted secreted proteins of the soybean rust pathogen Phakopsora pachyrhizi. Molecular Plant-Microbe Interactions, 31(1), 163-174.

Kim, B., Hwang, I. S., Lee, H. J., Lee, J. M., Seo, E., Choi, D., & Oh, C. S. (2018). Identification of a molecular marker tightly linked to bacterial wilt resistance in tomato by genome-wide SNP analysis. Theoretical and Applied Genetics, 1-14.

Kim, M. S., Kim, S., Jeon, J., Kim, K. T., Lee, H. A., Lee, H. Y., ... & Lee, Y. H. (2018). Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L. Scientific data, 5.

Kim, S., & Choi, D. (2018). New role of LTR-retrotransposons for emergence and expansion of disease-resistance genes and high-copy ge

Kim, S. B., Lee, H. Y., Choi, E. H., Park, E., Kim, J. H., Moon, K. B., ... & Choi, D. (2018). The Coiled-Coil and Leucine-Rich Repeat Domain of the Potyvirus Resistance Protein Pvr4 Has a Distinct Role in Signaling and Pathogen Recognition. Molecular Plant-Microbe Interactions, 31(9), 906-913.

Kim, N. H., Jayakodi, M., Lee, S. C., Choi, B. S., Jang, W., Lee, J., ... & Lee, Y. S. (2018). Genome and evolution of the shade‐requiring medicinal herb Panax ginseng. Plant biotechnology journal.

Seo, E., Kim, T., Park, J. H., Yeom, S. I., Kim, S., Seo, M. K., ... & Choi, D. (2018). Genome-wide comparative analysis in Solanaceous species reveals evolution of microRNAs targeting defense genes in Capsicum spp. DNA Research.